And after that reference the namespace inside the notes content material making use of a
And after that reference the namespace inside the notes content material using a prefix. The following instance illustrates this strategy:Author Manuscript Author Manuscript Author Manuscript Author ManuscriptAnother approach should be to declare the XHTML namespace within the notes content material itself, as within the following instance:The xmlns”http:w3.org999xhtml” declaration on body as shown above changes the default XML namespace inside it, such that all of its content is by default in theJ Integr Bioinform. Author manuscript; out there in PMC 207 June 02.Hucka et al.PageXHTML namespace. This is a specifically easy approach since it obviates the require to prefix just about every element using a namespace prefix (i.e xhtml: inside the earlier case). Other approaches are also doable. The content material of notes: SBML doesn’t demand the content of notes to become any specific XHTML element; the content material is often just about any wellformed XHTML content material. There are only two basic restrictions. The first restriction comes in the needs of XML: the notes element have to not contain an XML declaration nor a DOCTYPE declaration. That may be, notes ought to not containAuthor Manuscript Author Manuscript Author Manuscript Author PubMed ID:https://www.ncbi.nlm.nih.gov/pubmed/25504322 Manuscriptnor (exactly where the following is only one precise instance of a DOCTYPE declaration)The second restriction is intended to balance freedom of content material using the complexity of implementing application that may interpret the content. The content material of notes in SBML can consist only in the following possibilities: . A full XHTML document (minus the XML and DOCTYPE declarations, needless to say), that is certainly, XHTML content starting together with the html tag. The following is definitely an example skeleton:two.The body element from an XHTML document. The following is definitely an example skeleton:3.Any XHTML content that could be permitted inside a physique element. If this consists of numerous elements, each and every a single have to declare the XML namespace separately. The following is an example fragment:J Integr Bioinform. Author manuscript; readily available in PMC 207 June 02.Hucka et al.PageAnother method to summarize the restrictions above is just to say that the content of an SBML notes element may be only be a comprehensive html element, a body element, or whatever is permitted inside a body element. In practice, this does not limit in any meaningful way what is usually placed inside a notes element; by way of example, if an application or modeler desires to put a full XHTML web page, like a head element, it can be done by placing in every little thing beginning with all the html container. Nevertheless, the restrictions above do make it somewhat easier to create software program which can study and write the notes content. Cecropin B Appendix F describes one particular possible strategy to carrying out just that. 3.two.four The annotation elementWhereas the notes element described above is a container for content material to be shown straight to humans, the annotation element is usually a container for optional softwaregenerated content not meant to become shown to humans. Every object derived from SBase can have its personal value for annotation. The element’s content variety is XML type any, permitting basically arbitrary wellformed XML data content material. SBML areas only a couple of restrictions around the organization in the content material; these are intended to assist software program tools study and write the information too as enable lessen conflicts between annotations added by distinct tools. The use of XML namespaces in annotation: At the outset, software program developers should really keep in mind that multiple computer software tools may perhaps try to read and write annotation content. To.
